• Click on the titles of individual talks for abstract, slides and archived video (available approximately one week after the conclusion of the workshop).

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Coffee and Check-In
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Opening Remarks
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Fundamentals of Stringology I: Recap on Exact Pattern Matching and Alignment Algorithms
Dan Gusfield (UC Davis)
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Break
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Fundamentals of Stringology II: Probability and Statistics for Sequence Alignment
Michael Waterman (University of Southern California)
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Lunch
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Fundamentals of Stringology III: Suffix Tress and Suffix Arrays
Dan Gusfield (UC Davis)
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Break
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Fundamentals of Stringology IV: The Burrows-Wheeler Transform
Dan Gusfield (UC Davis)
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Break
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Fundamental Algorithms in Deep Sequencing I: Assembly
Pavel Pevzner (UC San Diego)
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Coffee and Check-In
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Fundamental Algorithms in Deep Sequencing II: Mapping/Alignment
Lior Pachter (California Institute of Technology)
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Break
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Fundamental Algorithms in Deep Sequencing III: Genomic Compression: Storage, Transmission, and Analytics
Noah M. Daniels (MIT)
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Lunch
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Introduction to Cancer Bioinformatics I: Inferring Genomic Variation from Tumor Sequencing Data
Ben Raphael (Brown University), Niko Beerenwinkel (ETH Zürich)
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Break
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Introduction to Cancer Bioinformatics II: Tumor Phylogeny
Ben Raphael (Brown University), Niko Beerenwinkel (ETH Zürich)
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Coffee and Check-In
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Introduction to Cancer Bioinformatics III: Cancer Progression Networks
Niko Beerenwinkel (ETH Zürich)
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Break
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Introduction to Regulatory Genomics and Epigenomics I: Introduction to the Biology of Gene Regulation
Nadav Ahituv (UCSF)
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Lunch
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Introduction to Regulatory Genomics and Epigenomics II: Motif Finding
Yaron Orenstein (Massachusetts Institute of Technology)
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Break
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Introduction to Regulatory Genomics and Epigenomics III: Hidden Markov Models in Gene Regulation
Uwe Ohler (MDC Berlin)
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Coffee and Check-In
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Introduction to Biological Network Analysis I: Network Basics and Properties
Donna Slonim (Tufts University)
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Break
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Introduction to Biological Network Analysis II: Protein-Protein Interaction Networks: From Graphs to Function
Donna Slonim (Tufts University)
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Lunch
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Introduction to Biological Network Analysis III: Identifying Network Modules
Roded Sharan (Tel Aviv University)
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Break
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Introduction to Biological Network Analysis IV: Network Alignment and Querying
Roded Sharan (Tel Aviv University)